Schedule an Appointment

Fecal Microbiota Transplant & Gut Health

by Dr. Anastasia Stocker

Fecal Microbiota Transplant (FMT) is a medical procedure that involves transferring healthy bacteria from one person’s feces to another person’s gastrointestinal system. FMT restores a healthy balance of gut bacteria, known as the microbiota, in individuals whose gut flora has been disturbed by certain medical conditions. Fecal transplant is commonly used as a treatment for Clostridium difficile (C. diff) infections that have not responded to antibiotic therapy.

The Utility of FMT: Restoring Gut Health

The human gut is home to trillions of beneficial bacteria, collectively known as the gut microbiota. These bacteria play a vital role in digestion, nutrient absorption, immune system regulation, and protecting against harmful pathogens. However, various factors such as infections, antibiotic use, and certain diseases can disrupt this delicate balance of gut bacteria, leading to gastrointestinal issues and other health problems.

FMT helps to alleviate symptoms of conditions like recurrent C. diff infections, inflammatory bowel diseases (like ulcerative colitis and Crohn’s disease), and even certain cases of irritable bowel syndrome (IBS). Currently, there are on-going studies taking place to research the usefulness and safety of FMT in the conditions listed above. In the US, FMT is only approved for the treatment of recurrent C. diff.

FMT places good bacteria from a healthy donor into the gastrointestinal tract of the patient. This new influx of good bacteria out-competes the growth of bad bacteria, including C. diff, preventing the growth of bad bacteria.

The Purpose of FMT: Rebuilding a Healthy Gut Ecosystem

The main goal of FMT is to introduce diverse and beneficial bacteria into the recipient’s gastrointestinal tract. By doing so, it helps to rebalance the gut ecosystem, improving digestion, reducing inflammation, and bolstering the overall immune response. This innovative therapy has shown great promise in providing long-term relief to patients who have struggled with stubborn gut-related issues.

The Procedure: How FMT is Performed

The FMT procedure is surprisingly simple and minimally invasive. It can be administered via three main routes: colonoscopy, enema, or orally in the form of encapsulated fecal material.

Colonoscopy: The most common method involves infusing a liquid suspension of donor feces into the recipient’s colon through a colonoscopy procedure.

Enema: An enema involves delivering the fecal material into the rectum, allowing it to reach the lower part of the colon.

Oral Capsules: For some cases, freeze-dried fecal material is encapsulated, allowing the recipient to take it orally like regular medication.

The entire procedure usually takes less than an hour, and patients can typically return home on the same day. The procedure is done by a gastroenterologist trained in the transplant procedure.

Insurance Coverage for FMT

As FMT is a relatively new and evolving treatment, insurance coverage may vary depending on the specific medical condition. In recent years, the acceptance of FMT has grown, and many insurance providers are beginning to cover the procedure for specific conditions, especially for recurrent C. diff infections. Many plans will cover pre-procedure testing and the cost of the colonoscopy. Call your insurance company to ask about FMT coverage and requirements for coverage. Ask about any co-pays, co-insurances, or deductibles that may need to be paid.

Fecal Microbiota Transplant is a groundbreaking treatment with immense potential in restoring gut health for individuals battling certain gastrointestinal conditions. As medical research continues to expand, we may witness FMT being used to address a broader range of health concerns related to gut dysbiosis. If you think you might benefit from this procedure, don’t hesitate to discuss it with your healthcare provider to explore the best course of action for your individual needs.

More questions? Schedule a visit with one of our providers today!

Want More Information?

Get our FREE ebook The 5 Foundations of Autoimmune Diseases, register for one of our FREE online webinars, or check out our blog for additional articles.

* indicates required





  • "Always amazing visits! I feel so cared for and know that my health is of first concern when I am here."

    - SR

  • "I highly recommend Aria Integrative Medicine if you have autoimmune issues or other health issues you are trying to get to the bottom of."

    - Alicia P.

  • "I’ve made best progress ever on reducing my symptoms. Thank you!"

    - JH

  • "My care at Aria is always extremely thorough and helpful. It’s great to feel like I’m in good hands!"

    - Beverly L.